Supplementary Materials for "Gaussian Processes for Oncogenomics"

Code to generate models, perform within sample testing and evaluate the results can be found here for an exponential covariance function and "naive" compartmentalisation, here for an exponential covariance function and "broad" compartmentalisation, here for a square-exponential covariance function and "naive" compartmentalisation and here for a square-exponential covariance function and "broad" compartmentalisation. NB the code points towards target .cnvall files which are not publically distributable, and takes command line input arguments parameterising the covariance function.